DNASTAR’s SeqMan NGen vs. Four Alternative Pipelines: Variant Detection Comparison Using Illumina Data from NA12878 To obtain reliable variant results, the accuracy of sequence alignment, consensus calling and variant

Source URL: www.dnastar.com

若手研究者インターナショナル・トレーニング・プログラム(ITP) バイオインフォマティクスとシステムズバイオロジーの国際連携教育研究プログラム 報告書 Name：U

Source URL: www.bic.kyoto-u.ac.jp

• Bioinformatics
• Computational phylogenetics
• Sequence alignment

Genome Informatics 16(2): 237–A Space-Efficient Algorithm for the Constrained Pairwise Sequence Alignment Problem

Source URL: www.jsbi.org

• Computational phylogenetics
• Mathematics
• Bioinformatics
• Applied mathematics
• Mathematical optimization
• Operations research
• Systems science
• Markov models
• Dynamic programming
• Multiple sequence alignment
• Sequence alignment
• Minimum spanning tree

Multiple sequence alignment using anchor points through generalized dynamic programming J. Gracy J. Sallantin

Source URL: www.jsbi.org

• Computational phylogenetics
• Bioinformatics
• Biology
• Applied mathematics
• Multiple sequence alignment
• Sequence alignment
• NeedlemanWunsch algorithm
• SmithWaterman algorithm
• Phylo
• Substitution matrix
• Dynamic programming
• Similarity measure

Prediction of Protein-Protein Interactions Based on Real-Valued Phylogenetic Profiles Using Partial Correlation Coefficient Tetsuya Sato1 1

Source URL: www.jsbi.org

• Bioinformatics
• Biology
• Proteinprotein interaction
• Sequence alignment
• Correlation and dependence
• Pearson product-moment correlation coefficient
• Proteinprotein interaction prediction
• Interactome

Evolutionary Innovations and the Organization of Protein Functions in Genotype Space Evandro Ferrada1,3*, Andreas Wagner1,2,3,4 1 Department of Biochemistry, University of Zurich, Zurich, Switzerland, 2 The Santa Fe Inst

Source URL: www.ieu.uzh.ch

• Protein structure
• Proteins
• Bioinformatics
• Genetics
• Computational phylogenetics
• Sequence space
• Protein superfamily
• Sequence alignment
• Protein domain
• Protein family
• Protein folding
• Protein

Accuracy of multiple sequence alignments as assessed by reference to structural alignments O. Gotoh Department of Biochemistry, Saitama Cancer Center Research Institute

Source URL: www.jsbi.org

• Bioinformatics
• Computational phylogenetics
• Multiple sequence alignment
• Sequence alignment
• Structural alignment
• Protein family
• Alignment
• T-Coffee

PRACTICAL 1: BLAST and Sequence Alignment Brief description of tutorial: The EBI and NCBI websites, two of the most widely used life science web portals are introduced along with some of the principal databases: the NCBI

Source URL: www.bcb.lon.ac.uk

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation Sean R. Eddy* Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of Ameri

Source URL: eddylab.org

Introduction Multiple Sequence Alignment Distributed Memory Shared Memory Computational Results Conclusions and Future Work

Source URL: www.cs.otago.ac.nz